Glyma06g02130 - SoyBase

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Report for Sequence Feature Glyma06g02130

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1405128
stop:	1410274
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20540	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:7112652-7115191 FORWARD LENGTH=351	SoyBase	E_val: 7.00E-170	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1007	KOG	WD repeat protein TSSC1, WD repeat superfamily	JGI		ISS
PTHR14205	Panther	WD-REPEAT PROTEIN	JGI		ISS
PTHR14205:SF1	Panther	gb def: hypothetical protein y87g2a.v - caenorhabditis elegans	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9R8L4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8L4_RICCO	SoyBase	E_val: 3.00E-171	ISS
UniRef100_I1K7E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7E3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02130

Paralog	Evidence	Comments
Glyma04g02030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g018800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02130

Limit To All Plant Sequences

>Glyma06g02130.2   sequence type=transcript   gene model=Glyma06g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGCAACTCCCCTGGTCCAAAAATACGGCTTCAGAAAAAGAAAAAAGAAAAAAACCCAGCGAGCAGCAACTCTACTTTGTATTGAGGTGTCGCACGGCGGGTGTAGTATTAGATTCGGCGTCGAAGAAAAAGAAAGAGCAATGCAAGCTGCGTCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGGTGCATATCGGATGTTAAAGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACTGAACTCTTCTGCGAGGGATTGTTCTCTCACCCCAACGAGATCTGGGACCTTGTCTCTTGTCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCACTTGACACAGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGACATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGACGTTTCAAAGAAAATTGCACTGGTACAATCGCAAGATTCCGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGAACCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATGCTTGTTACTGCAGAACATGAGTCTGGGATACATATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAATAAATCATGATGAGTTAACAACTGAAAGACAAGCCAATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTTGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTTGAATCAGTGAAGCCTTTCATCTCCAAAAAATAAAGTTCAGCACCAATTACCATCATTTGTCATCTTGTTTTGTATGTCAGTAATTTTCTGCCTCTCGGGTCTTCAGATAAATAGATGACTGAAAGACCCAAATGTTGCATTGATAGCTTAGAAATCAACATTTTGGCTTTATTTTTTTATTTTTTTTTTATCTTTCAACGTTGAATTGTTTTAGGCTGGATTGTGTTTCTAGCTTATTCTTTGATTAGACATCCATGTAATTCATGGAGTCGTTGTATATCTATGGAACTACAAGTTCATTCAAGTTCTTTCTTTATCTCTCGAGTTTGTTCTCTAATGTCTTCTTGGAAAGGTAATAAATCGACTGTAATTGGGAAACAGAACGTTCCTATATGAAATTGGCTGAGTGTCGTTATAGCTAAT

Coding sequences of Glyma06g02130

Limit To All Plant Sequences

>Glyma06g02130.1   sequence type=CDS   gene model=Glyma06g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTGCGTCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGGTGCATATCGGATGTTAAAGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACTGAACTCTTCTGCGAGGGATTGTTCTCTCACCCCAACGAGATCTGGGACCTTGTCTCTTGTCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCACTTGACACAGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGACATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGACGTTTCAAAGAAAATTGCACTGGTACAATCGCAAGATTCCGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGAACCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATGCTTGTTACTGCAGAACATGAGTCTGGGATACATATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAATAAATCATGATGAGTTAACAACTGAAAGGTCATCTTATTATCTTAAGATGTTACTATATTACATTTATTTTAGGACTACTTTTTATTCATCTATGCTTACTTTAGCAGACAAGCCAATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTTGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTTGAATCAGTGA

>Glyma06g02130.2   sequence type=CDS   gene model=Glyma06g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTGCGTCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGGTGCATATCGGATGTTAAAGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACTGAACTCTTCTGCGAGGGATTGTTCTCTCACCCCAACGAGATCTGGGACCTTGTCTCTTGTCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCACTTGACACAGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGACATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGACGTTTCAAAGAAAATTGCACTGGTACAATCGCAAGATTCCGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGAACCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATGCTTGTTACTGCAGAACATGAGTCTGGGATACATATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAATAAATCATGATGAGTTAACAACTGAAAGACAAGCCAATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTTGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTTGAATCAGTGAAGCCTTTCATCTCCAAAAAATAA

Predicted protein sequences of Glyma06g02130

Limit To All Plant Sequences

>Glyma06g02130.1   sequence type=predicted peptide   gene model=Glyma06g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKIALVQSQDSAGMLHKLSGGAWNPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHMLVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASINHDELTTERSSYYLKMLLYYIYFRTTFYSSMLTLADKPIHLPDGLIHCLIRTVIMKTAFMGSHGVLVNHGSLHHYPMMAGLLLNQ*

>Glyma06g02130.2   sequence type=predicted peptide   gene model=Glyma06g02130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKIALVQSQDSAGMLHKLSGGAWNPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHMLVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASINHDELTTERQANSSARWVDPLLNTYSDYEDSIYGLTWSSCEPWIFASLSYDGRVVVESVKPFISKK*

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